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Through to the database storage structure optimization design, improve the throughput of the database.Traditional methods using calibration data storage nodes fitness database storage model of partition, repeat redundant data exist in the database, not adaptive filtering, data storage overhead.Put forward a kind of adaptive filter based on the distribution structure of database storage optimization model, the first database storage mechanism and the distributed data structure analysis, phase space reconstruction method is used to reorganize, the structure of the storage space distribution distribution structure adaptive filtering method is used to extract the data flow of repeat redundant data filtering processing, improving the structure of the data in the database storage space distribution, optimized database storage.The simulation results show that the improved method of database construction, can improve the database storage throughput, reduce data storage overhead, improve the performance of database access and scheduling show good application value.