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For the special flight mission, the single fault logic of one type of avionics is difficult to meet the demand of autonomous reconfiguration on the multiple failure condition, and the system fault tolerance is reduced. To solve the difficult to quantify impact fault reconstruction of the avionics integrated multiple failure modes, one method of avionic fault diagnosis and system reconfiguration was put forward. By combining data mining technology based on the decision table of avionics integrated fault prediction process and multi-source information fault detection technology, the normal fault detection rate can be ensured more than 98%. And the results of avionics system reconfigurable show that state of the avionics system reconstruction of quantitative characterization of classification can be used to ensure the design of rapid system reconfigurable. In this paper, the method improves avionic fault detection rate and system fault tolerance.