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Hardware/software partitioning is the key issue of Reconfigurable Instruction Sets Processor(RISP) in hardware/software co-design. By comparing with Simulated Annealing Algorithm(SA) and Genetic Algorithm(GA), a hybrid algorithm is proposed , which combines the merits of this two algorithm. Meanwhile, the object function of GA is improved and Tsallis accepting criterion is used in SA. The essence of the algorithm contains two points. On one hand, the random state formed in SA is restricted by the result of GA. On the other hand, the population for GA is updated by the function that formed in SA according to the accepting criterion and random state. Compared to the pure GA and classical SA, the final experimental results indicate that using improved hybrid algorithm can significantly accelerate the convergence speed and increase the ability of getting an approximately optimal solution.